TY - JOUR
T1 - How platinum-induced nephrotoxicity occurs? Machine learning prediction in non-small cell lung cancer patients
AU - Huang, Shih Hui
AU - Chu, Chao Yu
AU - Hsu, Yu Chia
AU - Wang, San Yuan
AU - Kuo, Li Na
AU - Bai, Kuan Jen
AU - Yu, Ming Chih
AU - Chang, Jer Hwa
AU - Liu, Eugene H.
AU - Chen, Hsiang Yin
N1 - Funding Information:
The authors would like to thank the patients and their families for their participation and contribution to this research. This work was supported by research grants from Taipei Medical University-Wan Fang Hospital (102-wf-eva-29) and the Ministry of Science and Technology (MOST 110-2410-H-038-008). The sponsoring organization was not involved in the study design, data analysis, and interpretation. The authors bear all responsibility and have no conflict of interest with regard to this work.
Publisher Copyright:
© 2022
PY - 2022/6
Y1 - 2022/6
N2 - Background and objective: Platinum-induced nephrotoxicity is a severe and unexpected adverse drug reaction that could lead to treatment failure in non-small cell lung cancer patients. Better prediction and management of this nephrotoxicity can increase patient survival. Our study aimed to build up and compare the best machine learning models with clinical and genomic features to predict platinum-induced nephrotoxicity in non-small cell lung cancer patients. Methods: Clinical and genomic data of patients undergoing platinum chemotherapy at Wan Fang Hospital were collected after they were recruited. Twelve models were established by artificial neural network, logistic regression, random forest, and support vector machine with integrated, clinical, and genomic modes. Grid search and genetic algorithm were applied to construct the fine-tuned model with the best combination of predictive hyperparameters and features. Accuracy, precision, recall, F1 score, and area under the receiver operating characteristic curve were calculated to compare the performance of the 12 models. Results: In total, 118 patients were recruited for this study, among which 28 (23.73%) were experiencing nephrotoxicity. Machine learning models with clinical and genomic features achieved better prediction performances than clinical or genomic features alone. Artificial neural network with clinical and genomic features demonstrated the best predictive outcomes among all 12 models. The average accuracy, precision, recall, F1 score and area under the receiver operating characteristic curve of the artificial neural network with integrated mode were 0.923, 0.950, 0.713, 0.808 and 0.900, respectively. Conclusions: Machine learning models with clinical and genomic features can be a preliminary tool for oncologists to predict platinum-induced nephrotoxicity and provide preventive strategies in advance.
AB - Background and objective: Platinum-induced nephrotoxicity is a severe and unexpected adverse drug reaction that could lead to treatment failure in non-small cell lung cancer patients. Better prediction and management of this nephrotoxicity can increase patient survival. Our study aimed to build up and compare the best machine learning models with clinical and genomic features to predict platinum-induced nephrotoxicity in non-small cell lung cancer patients. Methods: Clinical and genomic data of patients undergoing platinum chemotherapy at Wan Fang Hospital were collected after they were recruited. Twelve models were established by artificial neural network, logistic regression, random forest, and support vector machine with integrated, clinical, and genomic modes. Grid search and genetic algorithm were applied to construct the fine-tuned model with the best combination of predictive hyperparameters and features. Accuracy, precision, recall, F1 score, and area under the receiver operating characteristic curve were calculated to compare the performance of the 12 models. Results: In total, 118 patients were recruited for this study, among which 28 (23.73%) were experiencing nephrotoxicity. Machine learning models with clinical and genomic features achieved better prediction performances than clinical or genomic features alone. Artificial neural network with clinical and genomic features demonstrated the best predictive outcomes among all 12 models. The average accuracy, precision, recall, F1 score and area under the receiver operating characteristic curve of the artificial neural network with integrated mode were 0.923, 0.950, 0.713, 0.808 and 0.900, respectively. Conclusions: Machine learning models with clinical and genomic features can be a preliminary tool for oncologists to predict platinum-induced nephrotoxicity and provide preventive strategies in advance.
KW - Artificial neural network
KW - Machine learning
KW - Nephrotoxicity
KW - Platinum
KW - Random forest
KW - Support vector machine
UR - http://www.scopus.com/inward/record.url?scp=85129777739&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85129777739&partnerID=8YFLogxK
U2 - 10.1016/j.cmpb.2022.106839
DO - 10.1016/j.cmpb.2022.106839
M3 - Article
C2 - 35550456
AN - SCOPUS:85129777739
SN - 0169-2607
VL - 221
JO - Computer Methods and Programs in Biomedicine
JF - Computer Methods and Programs in Biomedicine
M1 - 106839
ER -