Yeast cell detection using fuzzy automatic contrast enhancement (FACE) and you only look once (YOLO)

Zheng-Jie Huang, Brijesh Patel, Wei-Hao Lu, Tz-Yu Yang, Wei-Cheng Tung, Vytautas Bučinskas, Modris Greitans, Yu-Wei Wu, Po Ting Lin

Research output: Contribution to journalArticlepeer-review

2 Citations (Scopus)

Abstract

In contemporary biomedical research, the accurate automatic detection of cells within intricate microscopic imagery stands as a cornerstone for scientific advancement. Leveraging state-of-the-art deep learning techniques, this study introduces a novel amalgamation of Fuzzy Automatic Contrast Enhancement (FACE) and the You Only Look Once (YOLO) framework to address this critical challenge of automatic cell detection. Yeast cells, representing a vital component of the fungi family, hold profound significance in elucidating the intricacies of eukaryotic cells and human biology. The proposed methodology introduces a paradigm shift in cell detection by optimizing image contrast through optimal fuzzy clustering within the FACE approach. This advancement mitigates the shortcomings of conventional contrast enhancement techniques, minimizing artifacts and suboptimal outcomes. Further enhancing contrast, a universal contrast enhancement variable is ingeniously introduced, enriching image clarity with automatic precision. Experimental validation encompasses a diverse range of yeast cell images subjected to rigorous quantitative assessment via Root-Mean-Square Contrast and Root-Mean-Square Deviation (RMSD). Comparative analyses against conventional enhancement methods showcase the superior performance of the FACE-enhanced images. Notably, the integration of the innovative You Only Look Once (YOLOv5) facilitates automatic cell detection within a finely partitioned grid system. This leads to the development of two models-one operating on pristine raw images, the other harnessing the enriched landscape of FACE-enhanced imagery. Strikingly, the FACE enhancement achieves exceptional accuracy in automatic yeast cell detection by YOLOv5 across both raw and enhanced images. Comprehensive performance evaluations encompassing tenfold accuracy assessments and confidence scoring substantiate the robustness of the FACE-YOLO model. Notably, the integration of FACE-enhanced images serves as a catalyst, significantly elevating the performance of YOLOv5 detection. Complementing these efforts, OpenCV lends computational acumen to delineate precise yeast cell contours and coordinates, augmenting the precision of cell detection.

Original languageEnglish
Pages (from-to)16222
JournalScientific Reports
Volume13
Issue number1
DOIs
Publication statusPublished - Sept 27 2023

Keywords

  • Humans
  • Saccharomyces cerevisiae
  • Yeast, Dried
  • Artifacts
  • Biomedical Research
  • Cluster Analysis

Fingerprint

Dive into the research topics of 'Yeast cell detection using fuzzy automatic contrast enhancement (FACE) and you only look once (YOLO)'. Together they form a unique fingerprint.

Cite this