Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution

Shu Miaw Chaw; Yu Ching Liu; Yu Wei Wu; Han Yu Wang; Chan Yi Ivy Lin; Chung Shien Wu; Huei Mien Ke; Lo Yu Chang; Chih Yao Hsu; Hui Ting Yang; Edi Sudianto; Min Hung Hsu; Kun Pin Wu; Ling Ni Wang; James H. Leebens-Mack; Isheng J. Tsai

doi:10.1038/s41477-018-0337-0

Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution

Shu Miaw Chaw, Yu Ching Liu, Yu Wei Wu, Han Yu Wang, Chan Yi Ivy Lin, Chung Shien Wu, Huei Mien Ke, Lo Yu Chang, Chih Yao Hsu, Hui Ting Yang, Edi Sudianto, Min Hung Hsu, Kun Pin Wu, Ling Ni Wang, James H. Leebens-Mack, Isheng J. Tsai

Research output: Contribution to journal › Article › peer-review

143 Citations (Scopus)

Abstract

We present reference-quality genome assembly and annotation for the stout camphor tree (Cinnamomum kanehirae (Laurales, Lauraceae)), the first sequenced member of the Magnoliidae comprising four orders (Laurales, Magnoliales, Canellales and Piperales) and over 9,000 species. Phylogenomic analysis of 13 representative seed plant genomes indicates that magnoliid and eudicot lineages share more recent common ancestry than monocots. Two whole-genome duplication events were inferred within the magnoliid lineage: one before divergence of Laurales and Magnoliales and the other within the Lauraceae. Small-scale segmental duplications and tandem duplications also contributed to innovation in the evolutionary history of Cinnamomum. For example, expansion of the terpenoid synthase gene subfamilies within the Laurales spawned the diversity of Cinnamomum monoterpenes and sesquiterpenes.

Original language	English
Pages (from-to)	63-73
Number of pages	11
Journal	Nature Plants
Volume	5
Issue number	1
DOIs	https://doi.org/10.1038/s41477-018-0337-0
Publication status	Published - Jan 1 2019

ASJC Scopus subject areas

Plant Science

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Chaw, S. M., Liu, Y. C., Wu, Y. W., Wang, H. Y., Lin, C. Y. I., Wu, C. S., Ke, H. M., Chang, L. Y., Hsu, C. Y., Yang, H. T., Sudianto, E., Hsu, M. H., Wu, K. P., Wang, L. N., Leebens-Mack, J. H., & Tsai, I. J. (2019). Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. Nature Plants, 5(1), 63-73. https://doi.org/10.1038/s41477-018-0337-0

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abstract = "We present reference-quality genome assembly and annotation for the stout camphor tree (Cinnamomum kanehirae (Laurales, Lauraceae)), the first sequenced member of the Magnoliidae comprising four orders (Laurales, Magnoliales, Canellales and Piperales) and over 9,000 species. Phylogenomic analysis of 13 representative seed plant genomes indicates that magnoliid and eudicot lineages share more recent common ancestry than monocots. Two whole-genome duplication events were inferred within the magnoliid lineage: one before divergence of Laurales and Magnoliales and the other within the Lauraceae. Small-scale segmental duplications and tandem duplications also contributed to innovation in the evolutionary history of Cinnamomum. For example, expansion of the terpenoid synthase gene subfamilies within the Laurales spawned the diversity of Cinnamomum monoterpenes and sesquiterpenes.",

author = "Chaw, {Shu Miaw} and Liu, {Yu Ching} and Wu, {Yu Wei} and Wang, {Han Yu} and Lin, {Chan Yi Ivy} and Wu, {Chung Shien} and Ke, {Huei Mien} and Chang, {Lo Yu} and Hsu, {Chih Yao} and Yang, {Hui Ting} and Edi Sudianto and Hsu, {Min Hung} and Wu, {Kun Pin} and Wang, {Ling Ni} and Leebens-Mack, {James H.} and Tsai, {Isheng J.}",

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AU - Sudianto, Edi

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AU - Wu, Kun Pin

AU - Wang, Ling Ni

AU - Leebens-Mack, James H.

AU - Tsai, Isheng J.

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Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution

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