TY - JOUR
T1 - Prospective role and immunotherapeutic targets of sideroflexin protein family in lung adenocarcinoma
T2 - evidence from bioinformatics validation
AU - Dang, Huy Hoang
AU - Ta, Hoang Dang Khoa
AU - Nguyen, Truc T.T.
AU - Anuraga, Gangga
AU - Wang, Chih Yang
AU - Lee, Kuen Haur
AU - Le, Nguyen Quoc Khanh
N1 - Funding Information:
This work has been supported by the Taiwan Higher Education Sprout Project by the Ministry of Education (DP2-111-21121-01-A-12)
Publisher Copyright:
© 2022, The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.
PY - 2022/10
Y1 - 2022/10
N2 - As lung cancer remains the leading cause of cancer deaths globally, characterizing the tumor molecular profiles is crucial to tailoring treatments for individuals at advanced stages. Cancer cells exhibit strong dependence on iron for their proliferation, and several iron-regulatory proteins have been proposed as either oncogenes or tumor suppressive genes. This study aims to evaluate the prospective therapeutic and prognostic values of the sideroflexin (SFXN) gene family, whose functions involve mitochondrial iron metabolism, in lung adenocarcinoma (LUAD). Differential expression analysis using TIMER and UALCAN tools was first employed to compare SFXNs expression levels between normal and LUAD tissues. Next, SFXNs’ prognostic values, biological significance, and potential as immunotherapy candidates were examined from GEPIA, cBioPortal, MetaCore, Cytoscape, and TIMER databases. It was found that all members of SFXN family, except SFXN3, were differentially expressed in LUAD compared to normal samples and within different stages of LUAD. Survival analysis then revealed SFXN1 to be related to worse overall survival outcome in patients with LUAD. Furthermore, several correlations between expression of SFXN1 and immune infiltration cells were discovered. To conclude, our study provides evidence of SFXN family gene’s relevance to the prognosis and immunotherapeutic targets of LUAD.
AB - As lung cancer remains the leading cause of cancer deaths globally, characterizing the tumor molecular profiles is crucial to tailoring treatments for individuals at advanced stages. Cancer cells exhibit strong dependence on iron for their proliferation, and several iron-regulatory proteins have been proposed as either oncogenes or tumor suppressive genes. This study aims to evaluate the prospective therapeutic and prognostic values of the sideroflexin (SFXN) gene family, whose functions involve mitochondrial iron metabolism, in lung adenocarcinoma (LUAD). Differential expression analysis using TIMER and UALCAN tools was first employed to compare SFXNs expression levels between normal and LUAD tissues. Next, SFXNs’ prognostic values, biological significance, and potential as immunotherapy candidates were examined from GEPIA, cBioPortal, MetaCore, Cytoscape, and TIMER databases. It was found that all members of SFXN family, except SFXN3, were differentially expressed in LUAD compared to normal samples and within different stages of LUAD. Survival analysis then revealed SFXN1 to be related to worse overall survival outcome in patients with LUAD. Furthermore, several correlations between expression of SFXN1 and immune infiltration cells were discovered. To conclude, our study provides evidence of SFXN family gene’s relevance to the prognosis and immunotherapeutic targets of LUAD.
KW - Bioinformatics analysis
KW - Immune therapeutics
KW - Lung adenocarcinoma
KW - SFXN
KW - Sideroflexin
KW - SLC56A
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U2 - 10.1007/s10142-022-00883-3
DO - 10.1007/s10142-022-00883-3
M3 - Article
C2 - 35851932
AN - SCOPUS:85134498627
SN - 1438-793X
VL - 22
SP - 1057
EP - 1072
JO - Functional and Integrative Genomics
JF - Functional and Integrative Genomics
IS - 5
ER -