Projects per year
Personal profile
Education
- 2012 Ph.D., School of Informatics, Indiana University
- 2000 M.S., Department of Computer Science, National Tsing Hua University
- 1998 B.S. Department of Computer Science, Tunghai University
Experience
- 2023.08- Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2020.02-2023.07 Associate Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2016.10-2020.01 Assistant Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
Awards
- 2025 Top 2% researcher in the world (Stanford list)
Research Interests
- Bioinformatics
- Sequence Analysis
- Genomics
- Metagenomics
- Machine Learning
Related Link
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 2 Zero Hunger -
SDG 3 Good Health and Well-being -
SDG 5 Gender Equality -
SDG 6 Clean Water and Sanitation -
SDG 7 Affordable and Clean Energy -
SDG 12 Responsible Consumption and Production -
SDG 15 Life on Land
Fingerprint
Dive into the research topics where Yu-Wei Wu is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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運用泛基因體與微生物基因單位點變異預測細菌抗藥性(2/3)
Wu, Y.-W. (PI)
8/1/26 → 7/31/27
Project: A - Government Institution › b - National Science and Technology Council
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透過整合式機器學習特徵選取演算法的開發探勘細菌抗藥性的生物標記(2/3)
Wu, Y.-W. (PI)
8/1/26 → 7/31/27
Project: A - Government Institution › b - National Science and Technology Council
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Mining Antimicrobial Resistance Biomarkers through the Development of an Ensemble Machine Learning Feature Selection Algorithm
Wu, Y.-W. (PI)
8/1/25 → 7/31/26
Project: A - Government Institution › b - National Science and Technology Council
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Predicting Antimicrobial Resistances through Snps Extracted from Microbial Pan-Genome
Wu, Y.-W. (PI)
8/1/25 → 7/31/26
Project: A - Government Institution › b - National Science and Technology Council
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運用機器學習特徵選取演算法探索鮑曼不動桿菌的抗重金屬基因與抗藥性的相關性
Wu, Y.-W. (PI)
7/1/25 → 2/28/26
Project: A - Government Institution › b - National Science and Technology Council
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Chromosome-Level Genome Assembly of the Loach Goby Rhyacichthys aspro Offers Insights Into Gobioidei Evolution
Wang, T. Y., Wu, Y. W., Lu, H. J., Liao, T. Y., Tai, J. H., Huang, S. P., Wang, F. Y., Yu, T. H., Ting, C. T., Chaw, S. M. & Wang, H. Y., 2025, (Accepted/In press) In: Molecular Ecology Resources. 25, 7, e14110.Research output: Contribution to journal › Article › peer-review
1 Link opens in a new tab Citation (Scopus) -
Comparison of global transcriptomes for nontyphoidal Salmonella clinical isolates from pediatric patients with and without bacteremia after their interaction with human intestinal epithelial cells in vitro
Batsaikhan, B., Lin, P. C., Shigemura, K., Wu, Y. W., Onishi, R., Chang, P. R., Cheng, H. Y. & Fang, S. B., Feb 2025, In: Journal of Microbiology, Immunology and Infection. 58, 1, p. 38-47 10 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Link opens in a new tab Citations (Scopus) -
Highly-accurate prediction of colorectal cancer through low abundance uncultivated genomes recovered using metagenomic co-assembly and binning approach
Lin, P. T. & Wu, Y. W., Sept 2025, In: BMC Cancer. 25, Suppl 2, 1418.Research output: Contribution to journal › Article › peer-review
Open Access -
K-mer-Based Recognition of Multiple Load Conditions and Force Measurement Using Graphene/PVDF Helical Sensor
Chiou, J. Y., Patel, B., Chen, L. C., Hung, W. S., Wu, Y. W., Fong Huang, Z., Lee, Y. C. & Lin, P. T., 2025, In: IEEE Sensors Journal. 25, 8, p. 14266-14277 12 p.Research output: Contribution to journal › Article › peer-review
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PanARGMiner (Pan-Genomic Antimicrobial Resistance Gene Miner): An advanced feature selection framework for extracting key resistance genes from pan-genomic datasets
Chen, Y. C., Yang, M. R. & Wu, Y. W., Jan 2025, In: Computational and Structural Biotechnology Journal. 27, p. 5363-5374 12 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Citation (Scopus)
Datasets
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MOESM3 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Klingeman, D. M. (Creator), Henrissat, B. (Creator), Elkins, J. G. (Creator), Wu, Y.-W. (Creator), Podar, M. (Creator), Yang, Z. K. (Creator), Holwerda, E. K. (Creator), Shao, X. (Contributor), Brown, S. D. (Creator), Tian, L. (Creator), Richard, T. L. (Creator), Whitham, J. M. (Creator), Lombard, V. (Creator), Lynd, L. R. (Creator) & Liang, X. (Contributor), Figshare, 2018
DOI: 10.6084/m9.figshare.7057073.v1, https://doi.org/10.6084%2Fm9.figshare.7057073.v1
Dataset
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MOESM12 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Elkins, J. G. (Creator), Tian, L. (Creator), Richard, T. L. (Creator), Henrissat, B. (Creator), Brown, S. D. (Creator), Lombard, V. (Creator), Wu, Y.-W. (Creator), Yang, Z. K. (Creator), Shao, X. (Contributor), Holwerda, E. K. (Creator), Klingeman, D. M. (Creator), Liang, X. (Contributor), Lynd, L. R. (Creator), Whitham, J. M. (Creator) & Podar, M. (Creator), Figshare, 2018
DOI: 10.6084/m9.figshare.7057010.v1, https://doi.org/10.6084%2Fm9.figshare.7057010.v1
Dataset
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Additional file 10 of PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains
Her, H.-L. (Creator), Lin, P.-T. (Creator) & Wu, Y.-W. (Creator), Figshare, 2021
DOI: 10.6084/m9.figshare.16986888.v1, https://springernature.figshare.com/articles/dataset/Additional_file_10_of_PangenomeNet_a_pan-genome-based_network_reveals_functional_modules_on_antimicrobial_resistome_for_Escherichia_coli_strains/16986888/1
Dataset
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Additional file 1: of Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera
Wada, N. (Creator), Jane, W.-N. (Contributor), Wang, L.-T. (Creator), Wu, Y.-T. (Creator), Yamashiro, H. (Creator), Yang, C.-M. (Creator), Lee, D.-C. (Contributor), Lee, T.-C. (Contributor), Liu, C.-T. (Contributor), Lu, C.-Y. (Contributor), Hsiao, S.S.-Y. (Creator), Tang, S.-L. (Creator), Shih, C.-J. (Contributor), Tandon, K. (Contributor), Wu, Y.-W. (Creator), Denis, V. (Creator), Yang, S.-H. (Creator) & Huang, L. (Creator), Figshare, 2019
DOI: 10.6084/m9.figshare.7547531.v1, https://doi.org/10.6084%2Fm9.figshare.7547531.v1
Dataset
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Additional file 1: Figure S1. of ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes
Wu, Y.-W. (Creator), Figshare, 2018
DOI: 10.6084/m9.figshare.5808150.v1, https://doi.org/10.6084%2Fm9.figshare.5808150.v1
Dataset