Personal profile
Education
- 2012 Ph.D., School of Informatics, Indiana University
- 2000 M.S., Department of Computer Science, National Tsing Hua University
- 1998 B.S. Department of Computer Science, Tunghai University
Experience
- 2023.08- Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2020.02-2023.07 Associate Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2016.10-2020.01 Assistant Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
Awards
- 2025 Top 2% researcher in the world (Stanford list)
Research Interests
- Bioinformatics
- Sequence Analysis
- Genomics
- Metagenomics
- Machine Learning
Related Link
Fingerprint
- 1 Similar Profiles
Collaborations and top research areas from the last five years
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Predicting Antimicrobial Resistances through Snps Extracted from Microbial Pan-Genome
Wu, Y.-W. (PI)
8/1/25 → 7/31/26
Project: A - Government Institution › b - National Science and Technology Council
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Mining Antimicrobial Resistance Biomarkers through the Development of an Ensemble Machine Learning Feature Selection Algorithm
Wu, Y.-W. (PI)
8/1/25 → 7/31/26
Project: A - Government Institution › b - National Science and Technology Council
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運用機器學習特徵選取演算法探索鮑曼不動桿菌的抗重金屬基因與抗藥性的相關性
Wu, Y.-W. (PI)
7/1/25 → 2/28/26
Project: A - Government Institution › b - National Science and Technology Council
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Antimicrobial Resistance Genetic Biomarkers: a Pan-Genome-Based Novel Approach for Pinpointing Antimicrobial Resistance Biomarkers from Bacterial Genomic Sequences(3/3)
Wu, Y.-W. (PI)
8/1/24 → 7/31/25
Project: A - Government Institution › b - National Science and Technology Council
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利用XGBoost機器學習模型預測在不同基 因組成的屎腸球菌對五種常用抗生素藥 物之抗藥性與MIC數值
Wu, Y.-W. (PI)
7/1/24 → 2/28/25
Project: A - Government Institution › b - National Science and Technology Council
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Chromosome-Level Genome Assembly of the Loach Goby Rhyacichthys aspro Offers Insights Into Gobioidei Evolution
Wang, T. Y., Wu, Y. W., Lu, H. J., Liao, T. Y., Tai, J. H., Huang, S. P., Wang, F. Y., Yu, T. H., Ting, C. T., Chaw, S. M. & Wang, H. Y., 2025, (Accepted/In press) In: Molecular Ecology Resources. 25, 7, e14110.Research output: Contribution to journal › Article › peer-review
1 Link opens in a new tab Citation (Scopus) -
Comparison of global transcriptomes for nontyphoidal Salmonella clinical isolates from pediatric patients with and without bacteremia after their interaction with human intestinal epithelial cells in vitro
Batsaikhan, B., Lin, P. C., Shigemura, K., Wu, Y. W., Onishi, R., Chang, P. R., Cheng, H. Y. & Fang, S. B., Feb 2025, In: Journal of Microbiology, Immunology and Infection. 58, 1, p. 38-47 10 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Link opens in a new tab Citations (Scopus) -
Highly-accurate prediction of colorectal cancer through low abundance uncultivated genomes recovered using metagenomic co-assembly and binning approach
Lin, P. T. & Wu, Y. W., Sept 2025, In: BMC Cancer. 25, Suppl 2, 1418.Research output: Contribution to journal › Article › peer-review
Open Access -
K-mer-Based Recognition of Multiple Load Conditions and Force Measurement Using Graphene/PVDF Helical Sensor
Chiou, J. Y., Patel, B., Chen, L. C., Hung, W. S., Wu, Y. W., Fong Huang, Z., Lee, Y. C. & Lin, P. T., 2025, In: IEEE Sensors Journal. 25, 8, p. 14266-14277 12 p.Research output: Contribution to journal › Article › peer-review
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PanARGMiner (Pan-Genomic Antimicrobial Resistance Gene Miner): An advanced feature selection framework for extracting key resistance genes from pan-genomic datasets
Chen, Y. C., Yang, M. R. & Wu, Y. W., Jan 2025, In: Computational and Structural Biotechnology Journal. 27, p. 5363-5374 12 p.Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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MOESM4 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Brown, S. D. (Creator), Richard, T. L. (Creator), Henrissat, B. (Creator), Holwerda, E. K. (Creator), Shao, X. (Contributor), Wu, Y.-W. (Creator), Whitham, J. M. (Creator), Yang, Z. K. (Creator), Klingeman, D. M. (Creator), Lynd, L. R. (Creator), Liang, X. (Contributor), Elkins, J. G. (Creator), Podar, M. (Creator), Tian, L. (Creator) & Lombard, V. (Creator), Figshare, 2018
DOI: 10.6084/m9.figshare.7057082.v1, https://doi.org/10.6084%2Fm9.figshare.7057082.v1
Dataset
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Additional file 10 of PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains
Her, H.-L. (Creator), Lin, P.-T. (Creator) & Wu, Y.-W. (Creator), Figshare, 2021
DOI: 10.6084/m9.figshare.16986888.v1, https://springernature.figshare.com/articles/dataset/Additional_file_10_of_PangenomeNet_a_pan-genome-based_network_reveals_functional_modules_on_antimicrobial_resistome_for_Escherichia_coli_strains/16986888/1
Dataset
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Additional file 3 of PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains
Her, H.-L. (Creator), Lin, P.-T. (Creator) & Wu, Y.-W. (Creator), Figshare, 2021
DOI: 10.6084/m9.figshare.16986903.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_PangenomeNet_a_pan-genome-based_network_reveals_functional_modules_on_antimicrobial_resistome_for_Escherichia_coli_strains/16986903/1
Dataset
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Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Wu, Y.-W. (Creator), Whitham, J. M. (Creator), Tian, L. (Creator), Liang, X. (Contributor), Lombard, V. (Creator), Brown, S. D. (Creator), Klingeman, D. M. (Creator), Henrissat, B. (Creator), Yang, Z. K. (Creator), Shao, X. (Contributor), Richard, T. L. (Creator), Holwerda, E. K. (Creator), Lynd, L. R. (Creator), Podar, M. (Creator) & Elkins, J. G. (Creator), Figshare, 2018
DOI: 10.6084/m9.figshare.c.4224131.v1, https://doi.org/10.6084%2Fm9.figshare.c.4224131.v1
Dataset
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MOESM3 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Klingeman, D. M. (Creator), Henrissat, B. (Creator), Elkins, J. G. (Creator), Wu, Y.-W. (Creator), Podar, M. (Creator), Yang, Z. K. (Creator), Holwerda, E. K. (Creator), Shao, X. (Contributor), Brown, S. D. (Creator), Tian, L. (Creator), Richard, T. L. (Creator), Whitham, J. M. (Creator), Lombard, V. (Creator), Lynd, L. R. (Creator) & Liang, X. (Contributor), Figshare, 2018
DOI: 10.6084/m9.figshare.7057073.v1, https://doi.org/10.6084%2Fm9.figshare.7057073.v1
Dataset