Projects per year
Personal profile
Education
- 2012 Ph.D., School of Informatics, Indiana University
- 2000 M.S., Department of Computer Science, National Tsing Hua University
- 1998 B.S. Department of Computer Science, Tunghai University
Experience
- 2023.08- Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2020.02-2023.07 Associate Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2016.10-2020.01 Assistant Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
Research Interests
- Bioinformatics
- Sequence Analysis
- Genomics
- Metagenomics
- Machine Learning
Related Link
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Dive into the research topics where Yu-Wei Wu is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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由細菌泛基因體預測與尋找抗藥性細菌的基因體生物標記(3/3)
Wu, Y.-W. (PI)
8/1/24 → 7/31/25
Project: A - Government Institution › b - National Science and Technology Council
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針對機器學習特徵選取演算法選出的與 抗藥性高度相關的未知功能基因進行跨 物種基因比較分析
Wu, Y.-W. (PI)
7/1/24 → 2/28/25
Project: A - Government Institution › b - National Science and Technology Council
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利用XGBoost機器學習模型預測在不同基 因組成的屎腸球菌對五種常用抗生素藥 物之抗藥性與MIC數值
Wu, Y.-W. (PI)
7/1/24 → 2/28/25
Project: A - Government Institution › b - National Science and Technology Council
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由細菌泛基因體預測與尋找抗藥性細菌的基因體生物標記(2/3)
Wu, Y.-W. (PI)
8/1/23 → 7/31/24
Project: A - Government Institution › b - National Science and Technology Council
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透過非監督式微生物群基因體分類工具深度挖掘與分析微生物如何影響疾病的產生(3/3)
Wu, Y.-W. (PI)
8/1/23 → 7/31/24
Project: A - Government Institution › b - National Science and Technology Council
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Comparison of global transcriptomes for nontyphoidal Salmonella clinical isolates from pediatric patients with and without bacteremia after their interaction with human intestinal epithelial cells in vitro
Batsaikhan, B., Lin, P. C., Shigemura, K., Wu, Y. W., Onishi, R., Chang, P. R., Cheng, H. Y. & Fang, S. B., 2024, (Accepted/In press) In: Journal of Microbiology, Immunology and Infection.Research output: Contribution to journal › Article › peer-review
Open Access -
Low- and high-level information analyses of transcriptome connecting endometrial-decidua-placental origin of preeclampsia subtypes: A preliminary study
Sufriyana, H., Wu, Y. W. & Su, E. C. Y., 2024, In: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 29, p. 549-563 15 p.Research output: Contribution to journal › Conference article › peer-review
2 Citations (Scopus) -
Prognosticating Fetal Growth Restriction and Small for Gestational Age by Medical History
Sufriyana, H., Amani, F. Z., Al Hajiri, A. Z. Z., Wu, Y. W. & Su, E. C. Y., Jan 25 2024, In: Studies in Health Technology and Informatics. 310, p. 740-744 5 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Unitig-centered pan-genome machine learning approach for predicting antibiotic resistance and discovering novel resistance genes in bacterial strains
Do, D. T., Yang, M.-R., Vo, T. N. S., Le, N. Q. K. & Wu, Y.-W., 2024, In: Computational and Structural Biotechnology Journal. 23, p. 1864-1876 13 p.Research output: Contribution to journal › Article › peer-review
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A Cross-Validated Feature Selection (CVFS) approach for extracting the most parsimonious feature sets and discovering potential antimicrobial resistance (AMR) biomarkers
Yang, M. R. & Wu, Y. W., Jan 2023, In: Computational and Structural Biotechnology Journal. 21, p. 769-779 11 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus)
Datasets
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MOESM3 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Klingeman, D. M. (Creator), Henrissat, B. (Creator), Elkins, J. G. (Creator), Wu, Y.-W. (Creator), Podar, M. (Creator), Yang, Z. K. (Creator), Holwerda, E. K. (Creator), Shao, X. (Contributor), Brown, S. D. (Creator), Tian, L. (Creator), Richard, T. L. (Creator), Whitham, J. M. (Creator), Lombard, V. (Creator), Lynd, L. R. (Creator) & Liang, X. (Contributor), Figshare, 2018
DOI: 10.6084/m9.figshare.7057073.v1, https://doi.org/10.6084%2Fm9.figshare.7057073.v1
Dataset
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Additional file 1: of Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera
Wada, N. (Creator), Jane, W.-N. (Contributor), Wang, L.-T. (Creator), Wu, Y.-T. (Creator), Yamashiro, H. (Creator), Yang, C.-M. (Creator), Lee, D.-C. (Contributor), Lee, T.-C. (Contributor), Liu, C.-T. (Contributor), Lu, C.-Y. (Contributor), Hsiao, S.S.-Y. (Creator), Tang, S.-L. (Creator), Shih, C.-J. (Contributor), Tandon, K. (Contributor), Wu, Y.-W. (Creator), Denis, V. (Creator), Yang, S.-H. (Creator) & Huang, L. (Creator), Figshare, 2019
DOI: 10.6084/m9.figshare.7547531.v1, https://doi.org/10.6084%2Fm9.figshare.7547531.v1
Dataset
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Additional file 5 of PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains
Her, H.-L. (Creator), Lin, P.-T. (Creator) & Wu, Y.-W. (Creator), Figshare, 2021
DOI: 10.6084/m9.figshare.16986909.v1, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_PangenomeNet_a_pan-genome-based_network_reveals_functional_modules_on_antimicrobial_resistome_for_Escherichia_coli_strains/16986909/1
Dataset
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Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery
Wu, W.-K. (Creator), Panyod, S. (Contributor), Liu, P.-Y. (Contributor), Chen, C.-C. (Contributor), Kao, H.-L. (Contributor), Chuang, H.-L. (Contributor), Chen, Y.-H. (Contributor), Zou, H.-B. (Contributor), Kuo, H.-C. (Creator), Kuo, C.-H. (Creator), Liao, B.-Y. (Contributor), Chiu, T. H. T. (Creator), Chung, C.-H. (Contributor), Lin, A.Y.-C. (Creator), Lee, Y.-C. (Contributor), Tang, S.-L. (Creator), Wang, J.-T. (Contributor), Wu, Y.-W. (Creator), Hsu, C.-C. (Contributor), Sheen, L.-Y. (Contributor), Orekhov, A. N. (Creator) & Wu, M.-S. (Creator), Figshare, 2020
DOI: 10.6084/m9.figshare.c.5214059.v1, https://springernature.figshare.com/collections/Characterization_of_TMAO_productivity_from_carnitine_challenge_facilitates_personalized_nutrition_and_microbiome_signatures_discovery/5214059/1
Dataset
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PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains
Her, H.-L. (Creator), Lin, P.-T. (Creator) & Wu, Y.-W. (Creator), Figshare, 2021
DOI: 10.6084/m9.figshare.c.5701527.v1, https://springernature.figshare.com/collections/PangenomeNet_a_pan-genome-based_network_reveals_functional_modules_on_antimicrobial_resistome_for_Escherichia_coli_strains/5701527/1
Dataset