Graduate Institute of Biomedical Informatics

Search results

• MOESM3 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

  Klingeman, D. M. (Creator), Henrissat, B. (Creator), Elkins, J. G. (Creator), Wu, Y.-W. (Creator), Podar, M. (Creator), Yang, Z. K. (Creator), Holwerda, E. K. (Creator), Shao, X. (Contributor), Brown, S. D. (Creator), Tian, L. (Creator), Richard, T. L. (Creator), Whitham, J. M. (Creator), Lombard, V. (Creator), Lynd, L. R. (Creator) & Liang, X. (Contributor), Figshare, 2018

  DOI: 10.6084/m9.figshare.7057073.v1, https://doi.org/10.6084%2Fm9.figshare.7057073.v1

  Dataset

• Supplementary Material for: Exploring the Association between Statin Use and the Risk of Parkinson’s Disease: A Meta-Analysis of Observational Studies

  Nguyen, P.-A. (Creator), Poly, T. N. (Creator), Shabbir, S.-A. (Creator), Yang, H.-C. (Creator), Islam, M. M. (Creator), Li, Y.-C. J. (Creator), Huang, C.-W. (Creator) & Walther, B. A. (Creator), Karger Publishers, 2017

  DOI: 10.6084/m9.figshare.5607109.v1, https://doi.org/10.6084%2Fm9.figshare.5607109.v1

  Dataset

• Prediction of HIV-1 protease cleavage site using a combination of sequence, structural, and physicochemical features

  Singh, O. (Creator) & Su, E.C.-Y. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3652448.v1, https://doi.org/10.6084%2Fm9.figshare.c.3652448.v1

  Dataset

• 3X0T : Crystal structure of PirA

  Wang, H.-C. (Contributor), Wang, H.-C. (Contributor), Wang, A.H.-J. (Contributor), Lo, C.-F. (Contributor) & Ko, T.-P. (Contributor), RCSB-PDB, 2015

  DOI: 10.2210/pdb3x0t/pdb, https://www.rcsb.org/structure/3X0T

  Dataset

• Additional file 1: of Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera

  Wada, N. (Creator), Jane, W.-N. (Contributor), Wang, L.-T. (Creator), Wu, Y.-T. (Creator), Yamashiro, H. (Creator), Yang, C.-M. (Creator), Lee, D.-C. (Contributor), Lee, T.-C. (Contributor), Liu, C.-T. (Contributor), Lu, C.-Y. (Contributor), Hsiao, S.S.-Y. (Creator), Tang, S.-L. (Creator), Shih, C.-J. (Contributor), Tandon, K. (Contributor), Wu, Y.-W. (Creator), Denis, V. (Creator), Yang, S.-H. (Creator) & Huang, L. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.7547531.v1, https://doi.org/10.6084%2Fm9.figshare.7547531.v1

  Dataset

• Additional file 2: Table S1. of SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites

  Chang, T.-H. (Contributor), Weng, S.-L. (Creator), Lee, T.-Y. (Contributor), Weng, J.T.-Y. (Creator), Lu, C.-T. (Contributor) & Bui, V.-M. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3597362_d7.v1, https://doi.org/10.6084%2Fm9.figshare.c.3597362_d7.v1

  Dataset

• Data for: Evaluation of user experience and adherence with a mobile app for smoking cessation

  Konstantinidis, E. (Contributor), Styliadis, C. (Contributor), Bamidis, P. D. (Contributor), Luna-Perejon, F. (Creator), Malwade, S. (Contributor), Abdul, S. S. (Contributor), Civit, J. (Contributor), Cascado-Caballero, D. (Contributor), Li, Y.-C. (Contributor) & Civit, A. (Contributor), Mendeley Data, 2019

  DOI: 10.17632/xbzsd92nhc.1, https://data.mendeley.com/datasets/xbzsd92nhc

  Dataset

• Additional file 2: of Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas

  Robert Lai, L. K. (Contributor), Lee, T.-Y. (Contributor), Chan, C.-L. (Contributor), Chi, Y.-H. (Contributor), Huang, K.-Y. (Contributor), Li, W.-C. (Creator), Jhong, J.-H. (Contributor) & Chang, T.-H. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.5802852.v1, https://doi.org/10.6084%2Fm9.figshare.5802852.v1

  Dataset

• SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites

  Bui, V.-M. (Contributor), Weng, S.-L. (Creator), Lu, C.-T. (Contributor), Chang, T.-H. (Contributor), Weng, J.T.-Y. (Creator) & Lee, T.-Y. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3597362.v1, https://doi.org/10.6084%2Fm9.figshare.c.3597362.v1

  Dataset

• Additional file 3: of Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas

  Robert Lai, L. K. (Contributor), Lee, T.-Y. (Contributor), Chan, C.-L. (Contributor), Chang, T.-H. (Contributor), Jhong, J.-H. (Contributor), Li, W.-C. (Creator), Chi, Y.-H. (Contributor) & Huang, K.-Y. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.5802855.v1, https://doi.org/10.6084%2Fm9.figshare.5802855.v1

  Dataset

• Additional file 4: Figure S2. of Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features

  Lee, T.-Y. (Contributor), Huang, C.-H. (Contributor), Kao, H.-J. (Creator), Huang, K.-Y. (Contributor), Kaunang, F. J. (Contributor), Weng, S.-L. (Contributor), Lu, J.-J. (Contributor), Chang, T.-H. (Contributor) & Wang, H.-Y. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3718204_d4.v1, https://doi.org/10.6084%2Fm9.figshare.c.3718204_d4.v1

  Dataset

• Additional file 5: of Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas

  Chang, T.-H. (Contributor), Robert Lai, L. K. (Contributor), Lee, T.-Y. (Contributor), Chi, Y.-H. (Contributor), Jhong, J.-H. (Contributor), Li, W.-C. (Creator), Huang, K.-Y. (Contributor) & Chan, C.-L. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.5802861.v1, https://doi.org/10.6084%2Fm9.figshare.5802861.v1

  Dataset

• Supplement_material__the_timeline_of_leprosy_patients_treatment – Supplemental material for Encouraging On-Time Completion of Leprosy Patients Treatment: Implementing E-Leprosy Framework to Primary Health Care in Indonesia

  Rachmani, E. (Creator), Hsu, C.-Y. (Contributor), Chang, P. W. S. (Creator), Jumanto, J. (Contributor), Fuad, A. (Creator), Ningrum, D. N. A. (Creator), Yeh, C.-Y. (Contributor) & Lin, M.-C. (Contributor), Figshare, 2019

  DOI: 10.25384/sage.8185304.v1, https://doi.org/10.25384%2Fsage.8185304.v1

  Dataset

• Additional file 5 of PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains

  Her, H.-L. (Creator), Lin, P.-T. (Creator) & Wu, Y.-W. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.16986909.v1, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_PangenomeNet_a_pan-genome-based_network_reveals_functional_modules_on_antimicrobial_resistome_for_Escherichia_coli_strains/16986909/1

  Dataset

• Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery

  Wu, W.-K. (Creator), Panyod, S. (Contributor), Liu, P.-Y. (Contributor), Chen, C.-C. (Contributor), Kao, H.-L. (Contributor), Chuang, H.-L. (Contributor), Chen, Y.-H. (Contributor), Zou, H.-B. (Contributor), Kuo, H.-C. (Creator), Kuo, C.-H. (Creator), Liao, B.-Y. (Contributor), Chiu, T. H. T. (Creator), Chung, C.-H. (Contributor), Lin, A.Y.-C. (Creator), Lee, Y.-C. (Contributor), Tang, S.-L. (Creator), Wang, J.-T. (Contributor), Wu, Y.-W. (Creator), Hsu, C.-C. (Contributor), Sheen, L.-Y. (Contributor), Orekhov, A. N. (Creator) & Wu, M.-S. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.5214059.v1, https://springernature.figshare.com/collections/Characterization_of_TMAO_productivity_from_carnitine_challenge_facilitates_personalized_nutrition_and_microbiome_signatures_discovery/5214059/1

  Dataset

• Additional file 5: Table S3. of SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites

  Bui, V.-M. (Contributor), Weng, S.-L. (Creator), Lu, C.-T. (Contributor), Chang, T.-H. (Contributor), Weng, J.T.-Y. (Creator) & Lee, T.-Y. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3597362_d1.v1, https://doi.org/10.6084%2Fm9.figshare.c.3597362_d1.v1

  Dataset

• PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains

  Her, H.-L. (Creator), Lin, P.-T. (Creator) & Wu, Y.-W. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.c.5701527.v1, https://springernature.figshare.com/collections/PangenomeNet_a_pan-genome-based_network_reveals_functional_modules_on_antimicrobial_resistome_for_Escherichia_coli_strains/5701527/1

  Dataset

• 3W1O : Neisseria DNA mimic protein DMP12

  Wang, H.-C. (Contributor), Wu, M.-L. (Contributor), Ko, T.-P. (Contributor) & Wang, A.H.-J. (Contributor), RCSB-PDB, 2013

  DOI: 10.2210/pdb3w1o/pdb, https://www.rcsb.org/structure/3W1O

  Dataset

• MOESM13 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

  Podar, M. (Creator), Wu, Y.-W. (Creator), Lombard, V. (Creator), Whitham, J. M. (Creator), Holwerda, E. K. (Creator), Yang, Z. K. (Creator), Shao, X. (Contributor), Henrissat, B. (Creator), Brown, S. D. (Creator), Liang, X. (Contributor), Tian, L. (Creator), Elkins, J. G. (Creator), Lynd, L. R. (Creator), Klingeman, D. M. (Creator) & Richard, T. L. (Creator), Figshare, 2018

  DOI: 10.6084/m9.figshare.7057025.v1, https://doi.org/10.6084%2Fm9.figshare.7057025.v1

  Dataset

• MOESM9 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

  Yang, Z. K. (Creator), Holwerda, E. K. (Creator), Shao, X. (Contributor), Podar, M. (Creator), Henrissat, B. (Creator), Liang, X. (Contributor), Lombard, V. (Creator), Whitham, J. M. (Creator), Lynd, L. R. (Creator), Wu, Y.-W. (Creator), Tian, L. (Creator), Brown, S. D. (Creator), Elkins, J. G. (Creator), Klingeman, D. M. (Creator) & Richard, T. L. (Creator), Figshare, 2018

  DOI: 10.6084/m9.figshare.7057115.v1, https://doi.org/10.6084%2Fm9.figshare.7057115.v1

  Dataset

• 3VJZ : Crystal structure of the DNA mimic protein DMP19

  Wang, H.-C. (Contributor), Wang, A.H.-J. (Contributor) & Ko, T.-P. (Contributor), RCSB-PDB, 2012

  DOI: 10.2210/pdb3vjz/pdb, https://www.rcsb.org/structure/3VJZ

  Dataset

• Additional file 1: of Prediction of HIV-1 protease cleavage site using a combination of sequence, structural, and physicochemical features

  Su, E.C.-Y. (Creator) & Singh, O. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3652448_d2.v1, https://doi.org/10.6084%2Fm9.figshare.c.3652448_d2.v1

  Dataset

• Additional file 1: Figure S1. of SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites

  Lee, T.-Y. (Contributor), Chang, T.-H. (Contributor), Weng, S.-L. (Creator), Lu, C.-T. (Contributor), Bui, V.-M. (Contributor) & Weng, J.T.-Y. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3597362_d8.v1, https://doi.org/10.6084%2Fm9.figshare.c.3597362_d8.v1

  Dataset

• 3WDF : Staphylococcus aureus UDG

  Wang, H.-C. (Contributor), Ko, T.-P. (Contributor) & Wang, A.H.-J. (Contributor), RCSB-PDB, 2014

  DOI: 10.2210/pdb3wdf/pdb, https://www.rcsb.org/structure/3WDF

  Dataset

• Expression data from Sus scrofa atria

  Chen, M.-C. (Contributor), Chang, J.-P. (Contributor), Chang, T.-H. (Contributor), Hsu, S.-D. (Contributor), Huang, H.-D. (Contributor), Ho, W.-C. (Contributor), Wang, F.-S. (Contributor), Hsiao, C.-C. (Contributor) & Liu, W.-H. (Contributor), Gene Expression Omnibus, 2015

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43072

  Dataset